Index A | B | C | E | F | G | I | L | M | N | P | R | S | T | U | V A add_to_path() (in module biosim_extractor.metadata.populatemetadata) AmberLogParser (class in biosim_extractor.amber.amberlog) apply_mapping() (biosim_extractor.metadata.populatemetadata.MetadataPopulator method) assign_by_path() (in module biosim_extractor.metadata.populatemetadata) B biosim_extractor module biosim_extractor.amber.amberlog module biosim_extractor.gromacs.gromacslog module biosim_extractor.mdanalysis.toptraj module biosim_extractor.metadata.convertpopulated module biosim_extractor.metadata.populatemetadata module biosim_extractor.metadata.validatemetadata module biosim_extractor.units.unitconversion module C classify_box() (in module biosim_extractor.mdanalysis.toptraj) convert() (biosim_extractor.units.unitconversion.UnitConverter method) convert_populated_metadata_units() (in module biosim_extractor.metadata.convertpopulated) convert_values() (biosim_extractor.metadata.populatemetadata.MetadataPopulator method) convert_with_unit() (biosim_extractor.units.unitconversion.UnitConverter method) E extract_schema_version() (in module biosim_extractor.metadata.validatemetadata) F flatten_dict() (in module biosim_extractor.metadata.populatemetadata) G get_by_path() (in module biosim_extractor.metadata.populatemetadata) get_nucleic_sequence() (in module biosim_extractor.mdanalysis.toptraj) get_protein_sequence() (in module biosim_extractor.mdanalysis.toptraj) get_target_unit() (biosim_extractor.units.unitconversion.UnitConverter method) get_unit_type() (biosim_extractor.units.unitconversion.UnitConverter method) GromacsLogParser (class in biosim_extractor.gromacs.gromacslog) I is_numeric() (in module biosim_extractor.metadata.populatemetadata) is_standard_unit() (biosim_extractor.units.unitconversion.UnitConverter method) L load_schema() (biosim_extractor.metadata.populatemetadata.MetadataPopulator method) M main() (in module biosim_extractor.amber.amberlog) (in module biosim_extractor.gromacs.gromacslog) (in module biosim_extractor.mdanalysis.toptraj) (in module biosim_extractor.metadata.populatemetadata) MetadataPopulator (class in biosim_extractor.metadata.populatemetadata) module biosim_extractor biosim_extractor.amber.amberlog biosim_extractor.gromacs.gromacslog biosim_extractor.mdanalysis.toptraj biosim_extractor.metadata.convertpopulated biosim_extractor.metadata.populatemetadata biosim_extractor.metadata.validatemetadata biosim_extractor.units.unitconversion N needs_conversion() (biosim_extractor.units.unitconversion.UnitConverter method) normalize_key() (in module biosim_extractor.metadata.populatemetadata) P parse() (biosim_extractor.amber.amberlog.AmberLogParser method) (biosim_extractor.gromacs.gromacslog.GromacsLogParser method) (biosim_extractor.mdanalysis.toptraj.TopTrajParser method) parse_args() (in module biosim_extractor.amber.amberlog) (in module biosim_extractor.gromacs.gromacslog) (in module biosim_extractor.mdanalysis.toptraj) (in module biosim_extractor.metadata.populatemetadata) parse_log() (biosim_extractor.metadata.populatemetadata.MetadataPopulator method) populate() (biosim_extractor.metadata.populatemetadata.MetadataPopulator method) populate_toptraj() (biosim_extractor.metadata.populatemetadata.MetadataPopulator method) R remove_null_parents() (in module biosim_extractor.metadata.populatemetadata) resolve_schema_inputs() (in module biosim_extractor.metadata.populatemetadata) S safe_extract() (in module biosim_extractor.mdanalysis.toptraj) T TopTrajParser (class in biosim_extractor.mdanalysis.toptraj) transform_value() (in module biosim_extractor.metadata.populatemetadata) U UnitConverter (class in biosim_extractor.units.unitconversion) V validate() (biosim_extractor.metadata.populatemetadata.MetadataPopulator method) validate_extracted() (in module biosim_extractor.metadata.validatemetadata) validate_metadata() (in module biosim_extractor.metadata.validatemetadata)